Software Applications and Services

Design Software Application Architecture to Add Value to All Ecosystem Stakeholders

April 16 - 17, 2024 ALL TIMES EST

The Software Applications and Services track explores how organizations are shaping their data strategies and scientific decision-making by optimizing release management, automated testing, and harnessing software architecture tools and development trends. As the landscape of life sciences and healthcare evolves, so do the realms of Apps and Services. What tools are at our disposal for crafting Apps and Services? To what extent is "personalized" software development tailored to a specific company beneficial or necessary? Software forms the cornerstone of innovation, and a well-designed software application architecture can enhance the value within an ecosystem of stakeholders. The track will feature case studies highlighting software tools that facilitate data manipulation, data analytics approaches, data methods, standards, transparency, efficiency, security, and cost-effective solutions.

Monday, April 15

Recommended Pre-Conference Workshops and Symposia*8:00 am

On Monday, April 15, 2024, Cambridge Healthtech Institute is pleased to offer eight pre-conference Workshops scheduled across three time slots (8:00–10:00 am, 10:30 am–12:30 pm, and 2:00–4:00 pm) and six Symposia from 8:00 am–4:20 pm. All are designed to be instructional, and interactive and provide in-depth information on a specific topic. They allow for one-on-one interaction and provide a great way to explain more technical aspects that would otherwise not be covered during the main conference tracks that take place Tuesday–Wednesday.

*Separate registration required. See details on the Symposia here and details on the Workshops here.

PLENARY KEYNOTE PROGRAM

4:30 pm

Organizer's Remarks

Cindy Crowninshield, Executive Event Director, Cambridge Healthtech Institute

4:35 pm Plenary Keynote Introduction

Greg Mazzu, Regional Sales Manager, WEKA

4:45 pm PLENARY KEYNOTE PRESENTATION:

Unleashing the Power of Advanced Computing in Biomedical Informatics: A Vision for Transformative Collaboration

Daniel Stanzione, PhD, Executive Director, Texas Advanced Computing Center (TACC)

In the dynamic intersection of life science and computing, our mission at the Texas Advanced Computing Center (TACC) is to propel biomedical informatics into a new era of discovery and innovation. As computational leaders, we are dedicated to harnessing the potential of high-performance computing (HPC), machine learning (ML), and data analytics to revolutionize medicine. In this visionary pursuit, we prioritize the development of user-friendly interfaces and intuitive platforms. This approach ensures accessibility for executives and leaders in the life sciences industry, promoting seamless interaction with computational tools and fostering an environment where scientific and technological advancements coalesce. This presentation shares our vision for shaping the future of biomedical informatics where innovation, collaboration, and cutting-edge technologies converge to redefine the boundaries of what is possible in the realm of medicine.

Welcome Reception in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)6:00 pm

Close of Day7:15 pm

Tuesday, April 16

Registration and Morning Coffee7:00 am

PLENARY KEYNOTE PROGRAM

8:00 am

Organizer's Remarks

Allison Proffitt, Editorial Director, Bio-IT World and Clinical Research News

8:05 am Plenary Keynote Introduction

Josh Bond, Head of Product Management, Product Management, Revvity Signals

8:15 am PLENARY KEYNOTE PRESENTATION:

Unveiling Tomorrow's Possibilities: Embrace the Power of Digital Twins in Cancer Care and Research

Caroline Chung, MD, MSc, FRCPC, CIP, Vice President, Chief Data Officer, Director of Data Science Development & Implementation, Institute for Data Science in Oncology, MD Anderson Cancer Center

Explore the transformative potential of digital twins in revolutionizing cancer care and research. Gain insights into how digital twins can help deepen biological understanding, accelerate drug discovery, and personalize therapeutic strategies to optimize treatment outcomes for every individual. Amidst the exciting opportunities are the challenges that must be tackled to harness the power of digital twins to advance precision oncology, empower researchers and clinicians with unprecedented insights, and improve patient outcomes.

Coffee Break in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)9:30 am

Organizer's Welcome Remarks10:15 am

OPTIMIZING RESEARCH PROJECT MANAGEMENT: INSIGHTS FROM CHECKPOINTS TO IMPLEMENTATION

10:20 am

Chairperson's Remarks

Gurpreet Kanwar, Senior Manager Programs, Portfolio Delivery Group, NAV CANADA

10:25 am

Mastering Checkpoints for Enhanced Planning and Delivery Optimization

Gurpreet Kanwar, Senior Manager Programs, Portfolio Delivery Group, NAV CANADA

Creating checkpoints is essential for evaluating the present status, maintaining your project's course, and expediting delivery. This presentation will guide you in establishing appropriate checkpoints for your project/program and enhancing the overall plan for optimization. It will help you analyze the challenges and determine preventive measures for the future and review your plan to consider necessary adjustments or additions.

10:55 am

Study Tracker & Lab Atlas: Project Management Tools for Research Teams

William Oemler, Director, Software Engineering, Informatics & IT, Vesalius Therapeutics

Study Tracker is an open-source web application that helps research teams organize their projects, connect disparate systems, and automate tedious workflows. Lab Atlas is a managed software-as-a-service version of Study Tracker. This presentation will highlight how these tools can be used to increase productivity and preserve historical records at biotech companies. Learn how Study Tracker and Lab Atlas are used to solve several common problems at biotech companies by doing the following: 1) Tracking all projects & experiments within an organization and linking all the places their data lives; 2) Generating unique, human-readable codes for all experiments that can be used to identify work; 3) Automatically creating ELN folders & entries for experiments, and 4) Creating folders in a managed hierarchy for experimental data and documents in cloud storage systems. 

11:25 am

Knowledge Management Frameworks: Harnessing Ecosystem Collaborations for Simplifying Digital Therapeutic Development and Ensuring Organized Project Management

Matthew Schulze, Head, Digital Pioneering Medicines & Development Systems, Flagship Pioneering

In this presentation, we explore the power of shared learning and knowledge within the flagship pioneering ecosystem. We delve into how pioneering medicines leverage knowledge management frameworks to simplify digital therapeutic development. We'll discuss the technical implementation of Study Tracker, our research management platform, and demonstrate how integrative collaborations foster an efficient environment for scaling digital therapeutic initiatives, ensuring streamlined, organized project management.

11:55 am Large Language Models and Knowledge Graphs: Better Together

Ted Slater, Managing Principal, Scientific Informatics Consulting, EPAM

AI has evolved significantly since the first chatbot in 1964. Today's large language models (LLMs) like OpenAI’s ChatGPT can generate accurate responses but can also produce incorrect or “hallucinated” answers. Research shows LLM-generated queries perform better when combined with knowledge graphs (KGs) compared to relational databases. EPAM's DIAL, an AI orchestration platform, leverages this to enhance decision-making in biomedical research, drug discovery and patient care, driving innovation in these crucial fields. 

12:10 pm The Rational AI Architect—The Path for AI in Life Sciences

Aaron Jeskey, Senior Cloud Architect, PTP

  • AI – the “it” word for 2024
  • What is “The Rational AI Architect”
  • Best Practices for Early Stage Life Sciences data environments (Whitepaper available for download)
  • Current use cases for AI readiness
12:25 pm SaaS Application Architecture, Why Does it Matter?

Dan Schutzman, Senior SaaS Cloud Technologist, Oracle

SaaS Applications have become the predominant way enterprise applications are delivered. This shift is driven by promises of increased flexibility, access to cutting edge technologies, and cost efficiencies.  Learn about the key elements of a SaaS architecture that companies should be looking for and why, and how Oracle's approach allows it to uptake the latest technologies and keep customer data secure.

Session Break & Transition to Lunch12:55 pm

1:05 pm LUNCHEON PRESENTATION:From Data Chaos to Digital Clarity: AI, E-Signatures, and the Future of Life Sciences

Manu Vohra, Managing Director, Global Life Sciences, Box

Nathan McBride, Senior Vice President, IT, Xilio Therapeutics, Inc.

Hovsep Kirikian, Vice President of Strategy and Operations, USDM Life Sciences

Explore digital transformation in life sciences, highlighting the potential of unstructured data and AI. This session reveals how e-signatures and AI are revolutionizing research and patient outcomes. Discover how to utilize 90% of unstructured data, ensuring compliance and efficiency. With concise insights and AI use cases, we show the innovation pathway in life sciences, leading to a new era of digital efficiency and discoveries.

Refreshment Break in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)1:35 pm

UTILIZING ADVANCED SOFTWARE DEVELOPMENT PRACTICES TO SUPPORT SCIENTIFIC RESEARCH AND DRUG DISCOVERY PROCESSES

2:25 pm

Chairperson's Remarks

John Conway, Chief Visioneer Officer, 20/15 Visioneers

2:30 pm

Effectively Delivering Scientific Software and Machine Learning Applications to Scientists

Max Liu, PhD, Senior Software Engineer, R&D IT, AstraZeneca Pharmaceuticals

Sam McGrail, Senior Software Engineer, R&D IT, AstraZeneca

At AstraZeneca, the Augmented DMTA (Design-Make-Test-Analyze) platform delivers scientific applications to support scientists working in early drug discovery. In this talk, we’ll share how we effectively develop and deliver new features and models using modern best-practices for software development and operations, including cloud and high-performance computing. Keeping up with the latest scientific developments requires an agile approach using innovative technologies.  

3:00 pm

Graph Databases Are Akin to Top-Notch Car Engines: Phenomenal—But a Lot Less Useful without the Actual Car

Julian West, Graph Database Architect, AbbVie, Inc.

By combining graph databases with Open-Source Full-Stack Technology, companies large and small can be vastly empowered, and no longer at the mercy of juggling proprietary partial solutions, pushed around by vendors whose primary mission is to build walls, rather than dismantle them. Concrete examples will be shared: the modular architecture of the open-source projects BrainAnnex.org and Life123.science.
- NeoAccess: Layer to simplify python interface and common database operations
- NeoSchema: Optional, very flexible, schema
- DataManager: Including full-text indexing
- WebAPI: Flask
- UI: Vue.js  + cytoscape.js ball visualization

3:30 pm

The UK Biobank Story: Transforming Future Health

Naomi Allen, DPhil, MSc, BSc, Professor of Epidemiology, Nuffield Department, Population Health, University of Oxford; Chief Scientist, UK Biobank, Cancer Research UK Epidemiology Unit, University of Oxford

UK Biobank is a large-scale cohort study and biomedical database and is one of the world’s most important and widely-used health research resources, containing a wealth of data on genomics, lifestyle factors and health outcomes on half a million participants. Its unique combination of scale, depth, maturity, and accessibility is far ahead of any comparable biological resources (and will remain so for many years to come). As a result, more than 30,000 researchers (10,000 in the US) from around the world are using UK Biobank, with exponential growth in publications and patents now emerging from it. 20 years from its initiation, UK Biobank has surpassed all expectations for its extraordinary impact on increasing understanding of the determinants of disease, identifying factors that can predict future disease risk more accurately and identifying early disease biomarkers. During the next 5 years, UK Biobank would like to increase the depth of characterization of various types of risk factors for disease, and of the many different types of health outcome occurring in participants in order to substantially increase its value for discovery science.

4:00 pm

Enabling a New Era of Precision Medicine for Complex Chronic Disease

Simon Beaulah, SVP Healthcare & Head of US Operations, PrecisionLife

The 20 years since the Human Genome Project have seen transformational advances in molecular understanding of cancers and rare disease, but precision medicine has had limited impact on improving treatment of complex, chronic indications in neuroscience, immune, and inflammatory disorders. To overcome this challenge, we have completely reimagined how to analyze, semantically integrate, and visualize patient and ‘omics data. This approach reveals deeper understanding of disease biology and enables development of diagnostic biomarkers and precision-targeted therapies for chronic diseases that affect billions of people.

Best of Show Awards Reception in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)4:30 pm

Close of Day5:45 pm

Wednesday, April 17

Registration and Morning Coffee7:30 am

PLENARY KEYNOTE PROGRAM

8:00 am

Organizer's Remarks

Cindy Crowninshield, Executive Event Director, Cambridge Healthtech Institute

8:05 am

Innovative Practices Awards

Joseph Cerro, Independent Consultant

John Conway, Chief Visioneer Officer, 20/15 Visioneers

Chris Dwan, Independent Consultant, Dwan, LLC

Allison Proffitt, Editorial Director, Bio-IT World and Clinical Research News

Since 2003, Bio-IT World has hosted an elite awards program with the goal of highlighting outstanding examples of how technology innovations and strategic initiatives are being applied to advance life sciences research. The 2024 Innovative Practices Awards winners represent excellence in innovation in the areas of informatics, pre-competitive collaboration, clinical and health IT, and genomics. Companies driving the winning entries include AstraZeneca, DNAnexus, Pistoia Alliance, Regeneron, Tempus, and UK Biobank.

8:20 am Plenary Keynote Introduction

Kshitij Kumar, Founder and CEO, Clovertex

8:30 am PLENARY KEYNOTE PRESENTATION:

Lights, Camera, Science: Film and Social Media Influence on Real-World Scientific Progress and Innovation

David Hewlett, Actor/Writer/Director; Creator, The Tech Bandits

Now, more than ever, life sciences are subject to misinterpretation, reduction, and inaccuracies at the hands of social media and Hollywood. And while it might be tempting to ignore the fake science streaming on YouTube and TikTok, there’s a generation of would-be investigators for whom those platforms might be their primary introduction to research and discovery. David Hewlett has had his share of big screen roles representing science—and science fiction—and he believes it’s imperative that the scientific and technology communities take back the narrative, filling gaps between what’s real and what could be real soon! He’s meeting this future generation where they are in schools, on YouTube, and on Twitch, championing real science in all its iterative, messy, exploratory glory, to recruit bright, diverse minds to lead the next generation of real scientists. He’s got our report from the front lines.

Coffee Break in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)9:45 am

Organizer's Remarks10:30 am

MODERNIZATION, OPTIMIZATION, AND INNOVATION IN BIOPHARMA RESEARCH WORKFLOWS

10:35 am Chairperson's Remarks

Adrian Stevens, Chief Product Officer, Chemaxon

10:40 am

Streamlining Our Product Portfolio to Increase Delivery Agility and Drive Down Operational Costs

Rachael Holmes, Scientist II, Compound Management, Novartis Institutes for BioMedical Research, Inc.

We share the story of how our Research Informatics organization came together to reimagine our approach to a drug discovery software product portfolio containing generations of applications built/bought to support decades of research innovation and strategic change. We share how shifting our mindset from projects to products, from applications to capabilities, and from business-aligned silos to a holistic end-to-end drug discovery perspective is enabling and incentivizing modernization, cost-optimization, innovation, and effective delivery on significant new demand.

11:10 am CO-PRESENTATION:

Redefining Small Molecule Lead Discovery through Automation and Digital Advancements

Romel Bobby, PhD, Product Line Manager, In-Vitro Data Management, Roche

Jan Woerner, Senior Scientist & IT Business Analyst, Informatics, Roche Innovation Center Basel

In this talk, we explore the approach taken in our Small Molecule Lead Discovery department to scale automation and digital solutions and how this will lead to new ways of working along the discovery value chain.

11:40 am

Why One Is Better Than Ten: Takeda’s Journey of the First Global ELN

David Deng, PhD, Scientific Informatics Technology Lead, Data Sciences Institute, Takeda Pharmaceuticals, Inc.

Replacing a legacy ELN system can be a long and painful process. How about replacing 10 of them together? This presentation will tell the story of Takeda’s multi-year journey to decommission 10 fragmented legacy ELNs, and how a team of ELN implementation experts face the obstacles, and manage technical and organizational challenges to deploy a global integrated SaaS ELN solution to 2,000 R&D scientists.

12:10 pm

Tales from the Scientific Software and Informatics Crypt

John Conway, Chief Visioneer Officer, 20/15 Visioneers

This talk will be about 30+ years of observations of what not to do and what to do regarding scientific software selection, implementation, and sustainability in biopharma. Examples of successes and failures will be incorporated into the talk for knowledge sharing and learning. The talk will focus on the need for composable environments, collaboration, usability, FAIR (data, processes), extensibility, culture, strategy, assessments, analysis, scientific business process, community, and experience. There will be a lot of information and case studies packed into this 30-minute talk!

12:40 pm An AI Enabled Informatics Platform to Speed Discovery and Development

Rob Brown, Senior Director, Product Marketing, Sapio Sciences

The value of a modern, AI enabled informatics platform to speed discovery and development.

• The power of a modern low-code/no-code platform for ease use and deployment
• The value of a unified LIMS and ELN for seamless experiment, workflow tracking and collaboration
• Scientific data cloud solution to unify and contextualize all research data
• AI assistants for experiment building, search, support and code-gen

Session Break & Transition to Lunch1:10 pm

Luncheon Presentation (Sponsorship Opportunity Available) or Enjoy Lunch on Your Own1:20 pm

Refreshment Break in the Exhibit Hall with Last Chance Poster Viewing (Sponsorship Opportunity Available)1:50 pm

TRENDS FROM THE TRENCHES

Chairperson's Remarks (Sponsorship Opportunity Available)2:30 pm

2:35 pm

Trends from the Trenches

Ari E. Berman, PhD, CEO, BioTeam, Inc.

Laura Boykin Okalebo, PhD, Senior Scientific Consultant, BioTeam, Inc.

Since 2010, “Trends from the Trenches” has been one of the most popular annual traditions in the Bio-IT program. The intent of the talk is to deliver a candid (and occasionally blunt) assessment of the best, the most worthwhile, and the most overhyped information technologies (IT) for life sciences. Learn about computing, storage, data transfer, networks, cloud, data science, machine learning, and more that are involved in supporting data-intensive science.

Close of Conference4:05 pm






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