AI for Oncology, Precision Medicine, and Health

Enhance Accessibility and Exploration of Comprehensive Multiomics Real-World Data

April 16 - 17, 2024 ALL TIMES EST

Accessing robust multimodal real-world data (RWD) sets in oncology can often be challenging, as they are frequently compiled with incomplete genomic and clinical information. This lack of comprehensiveness hinders the integration of tumor biology with clinical practices. The AI for Oncology, Precision Medicine, and Health track explores technology tools and platform solutions to facilitate the application of artificial intelligence in disease pathology. What are the nuanced complexities of the problem at hand before deploying these technology tools? What data resources are accessible to ensure effective utilization? Throughout the track, speakers present best practice use cases that address these critical questions, ultimately aiding in harnessing information for the seamless transition of translational research findings into diagnostic support and clinical applications. A diagnostic provider that adopts a comprehensive patient profiling approach along with user-friendly tools for data linkage and analysis would provide immense value to the research community.

Monday, April 15

Recommended Pre-Conference Workshops and Symposia*8:00 am

On Monday, April 15, 2024, Cambridge Healthtech Institute is pleased to offer eight pre-conference Workshops scheduled across three time slots (8:00–10:00 am, 10:30 am–12:30 pm, and 2:00–4:00 pm) and six Symposia from 8:00 am–4:20 pm. All are designed to be instructional, and interactive and provide in-depth information on a specific topic. They allow for one-on-one interaction and provide a great way to explain more technical aspects that would otherwise not be covered during the main conference tracks that take place Tuesday–Wednesday.

*Separate registration required. See details on the Symposia here and details on the Workshops here.

PLENARY KEYNOTE PROGRAM

4:30 pm

Organizer's Remarks

Cindy Crowninshield, Executive Event Director, Cambridge Healthtech Institute

4:35 pm Plenary Keynote Introduction

Greg Mazzu, Regional Sales Manager, WEKA

4:45 pm PLENARY KEYNOTE PRESENTATION:

Unleashing the Power of Advanced Computing in Biomedical Informatics: A Vision for Transformative Collaboration

Daniel Stanzione, PhD, Executive Director, Texas Advanced Computing Center (TACC)

In the dynamic intersection of life science and computing, our mission at the Texas Advanced Computing Center (TACC) is to propel biomedical informatics into a new era of discovery and innovation. As computational leaders, we are dedicated to harnessing the potential of high-performance computing (HPC), machine learning (ML), and data analytics to revolutionize medicine. In this visionary pursuit, we prioritize the development of user-friendly interfaces and intuitive platforms. This approach ensures accessibility for executives and leaders in the life sciences industry, promoting seamless interaction with computational tools and fostering an environment where scientific and technological advancements coalesce. This presentation shares our vision for shaping the future of biomedical informatics where innovation, collaboration, and cutting-edge technologies converge to redefine the boundaries of what is possible in the realm of medicine.

Welcome Reception in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)6:00 pm

Close of Day7:15 pm

Tuesday, April 16

Registration and Morning Coffee7:00 am

PLENARY KEYNOTE PROGRAM

8:00 am

Organizer's Remarks

Allison Proffitt, Editorial Director, Bio-IT World and Clinical Research News

8:05 am Plenary Keynote Introduction

Josh Bond, Head of Product Management, Product Management, Revvity Signals

8:15 am PLENARY KEYNOTE PRESENTATION:

Unveiling Tomorrow's Possibilities: Embrace the Power of Digital Twins in Cancer Care and Research

Caroline Chung, MD, MSc, FRCPC, CIP, Vice President, Chief Data Officer, Director of Data Science Development & Implementation, Institute for Data Science in Oncology, MD Anderson Cancer Center

Explore the transformative potential of digital twins in revolutionizing cancer care and research. Gain insights into how digital twins can help deepen biological understanding, accelerate drug discovery, and personalize therapeutic strategies to optimize treatment outcomes for every individual. Amidst the exciting opportunities are the challenges that must be tackled to harness the power of digital twins to advance precision oncology, empower researchers and clinicians with unprecedented insights, and improve patient outcomes.

Coffee Break in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)9:30 am

Organizer's Welcome Remarks10:15 am

MULTIMODAL DATA FOR PRECISION DIAGNOSTICS AND RESEARCH

Chairperson's Remarks (Sponsorship Opportunity Available)10:20 am

10:25 am

Machine Learning in Precision Medicine @AbbVie: Multiomics Perspective

Abhishek Pandey, PhD, Global Lead & Principal Research Scientist, Information Research, AbbVie, Inc.

Explore the integration of diverse data modalities, including genomics, clinical records, and imaging, using machine learning for a comprehensive understanding of complex diseases in preclinical and clinical contexts. While traditional multiomics analysis combines RNA, proteomics, and clinical data, this presentation highlights the innovative inclusion of imaging data, and enriching the multi-modal framework. Learn about practical applications of multiomics analysis, combining imaging and genomics data, and delve into exciting developments in radiogenomics and pathogenomics for a holistic understanding of disease mechanisms.

10:55 am

A First Look at National-Scale Multimodal Cancer Research in Practice

Prabhu Arumugam, PhD, Director of Clinical Data and Imaging, Caldicott Guardian, Genomics England

Genomics England and its partners are currently building the world's largest multimodal research platform for cancer. The platform uniquely brings together clinical WGS and healthcare data—from Genomics England's work enabling the NHS to deliver precision medicine through the Genomic Medicine Service—with hundreds of thousands of matched pathology and radiology images being digitized by the National Pathology Imaging Consortium and made accessible through AWS. Join us to hear about the progress and challenges of making 100PB of data queriable in the cloud; a first look at the sort of insights this platform can provide; and how industry can use it and partner with Genomics England and its participants to advance new therapies.

11:25 am

Building Trustworthy Biomedical AI Assistants

Ian Maurer, CTO, GenomOncology LLC

Large Language Models (LLMs) represent a transformational technology. Despite their prowess, they face limitations in handling complex data types, like genomics, and in citing references or incorporating the latest findings effectively. The integration of LLMs with continually updated knowledge bases can create conversational AI tools that not only augment and amplify the reasoning and judgment of experts but also ensure accurate and relevant insights. This presentation will cover core principles, proven patterns, and common challenges with deploying practical and trustworthy AI Assistants in regulated and rapidly evolving industries.

11:55 am Unbiased NGS Analysis: Introducing Pangenotyper

Steven Van Vooren, PhD, Director, Product Marketing, Velsera

Brendan Gallagher, Head of Business Development, Sentieon

Traditional NGS analysis faces reference bias, hiding crucial genetic variations, especially in non-European populations. Pangenotyper utilizes pangenome references to eliminate bias and boost variant calling accuracy. Say goodbye to incomplete variant calling and welcome Pangenotyper as the seamless alternative, surpassing traditional methods in accuracy, efficiency, and cost-effectiveness for research and clinical applications.

12:25 pm Integrating Multimodal Data for Computational Phenotyping

Brice Sarver, PhD, Director, ZS Discovery, ZS Associates

Increasingly, clinicians and researchers have access to a variety of complementary data alongside electronic health records. If combined successfully, the integration of diverse data modalities reveals patterns that would not otherwise be captured, such as patient clusters and disease subtypes. This presentation will expand on traditional integration approaches by discussing computational phenotyping, leveraging machine learning to tackle the problem of generating insight into clinical phenotypes and their drivers.

Session Break & Transition to Lunch12:55 pm

Luncheon Presentation (Sponsorship Opportunity Available) or Enjoy Lunch on Your Own1:05 pm

Refreshment Break in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)1:35 pm

APPLYING DATA TO UNDERSTAND DISEASE PATHOLOGY AND APPLICATION IN THERAPEUTIC AREAS

2:25 pm

Chairperson's Remarks

Ian Maurer, CTO, GenomOncology LLC

2:30 pm

AI-Based Screening for Lung Cancer Patients

Kamal Rawal, PhD, Professor and Head, Center for Computational Biology and Bioinformatics, Amity University

Lung cancer stands as a significant global health challenge, with early diagnosis playing a pivotal role in improving patient outcomes. Current diagnostic methods, such as radiography, computed tomography (CT), positron emission tomography (PET), histopathology, and next-generation sequencing, are often time-consuming, costly, or require expert interpretation. These challenges are especially pronounced in resource-constrained countries like India, where widespread access to panel-based next-generation sequencing is limited. In addition, issues related to tissue adequacy in lung core biopsies and inherent intratumoral heterogeneity further emphasize the need for an AI-driven solution capable of autonomously detecting and learning nuanced lung nodule features from PET-CT and histopathological images while predicting the likelihood of mutations in critical oncogenes like EGFR.

In this study, we aimed to harness radiological and histopathological features from whole slide images (WSI) to predict lung malignancy, cancer type, and the presence of mutations, particularly in the EGFR gene. Building upon a prototype system, our project outlines the expansion of our initial work to create an end-to-end AI pipeline ready for deployment in oncology hospitals. This pipeline predicts essential lung nodule features, including radiological characteristics (e.g., malignancy, texture, margin), and histopathology (e.g., acinar, lepidic, papillary), and associates them with mutational information.

To date, we have assembled a valuable resource, comprising extracted lung cancer CT/PET scan datasets, alongside annotations from 2000 Indian lung cancer patients, as well as an independent dataset sourced from the Cancer Image Archive and other repositories. We have also developed a user-friendly AI web tool tailored for clinical use, with preliminary tests demonstrating impressive accuracy (e.g., achieving a peak AUC of 91% in specific use cases). Our next phase anticipates the acquisition of an additional 2000 images, along with annotations and mutational information from our collaborators. Our system is a robust machine learning (ML) platform, uniquely tailored for Indian lung cancer patients, incorporating multiple modules, including Region-based Convolutional Neural Network (R-CNN) and other pertinent deep learning libraries. Our ultimate goal is to create a cost-effective AI platform that will empower oncologists, radiologists, and patients in resource-limited settings to achieve highly effective early lung cancer screening. This initiative promises to reduce costs and enhance treatment options, significantly benefiting patients.
3:00 pm CO-PRESENTATION:

Optimizing Clinical Data Enablement: Leveraging NLP and OCR for Seamless Data Integration & Utilization with City of Hope’s POSEIDON Platform

James Cole, Vice President, Product Innovation, GenomOncology LLC

Samir Courdy, Senior Vice President, Informatics, City of Hope

City of Hope's POSEIDON (Precision Oncology Software Environment Interoperable Data Ontologies Network) stands as an award-winning, enterprise-wide data lake platform and precision medicine initiative designed to output patient-specific insights and recommendations rooted in real-world data and evidence. Explore how City of Hope integrates both structured and unstructured patient and clinical data through HopeIQ—an advanced Natural Language Processing (NLP) data curation solution that leverages GenomOncology’s igniteIQ data-enablement solution. This innovative technology incorporates the expert-in-loop model, biomarker normalization, and structure detection, not only elevating the efficiency of NLP but also ensuring unprecedented accuracy. Dive into the significant impact of this data enablement strategy, and how it unlocks the true value of healthcare data.

3:30 pm

Transforming Cancer Diagnoses: Pioneering AI Partnerships with the DoD and DoE

Niven R. Narain, PhD, President & CEO, BPGbio

This talk aims to showcase the true potency of partnership and the boundless potential of AI in advancing healthcare. You will hear about the remarkable journey of partnership with BPGbio & the US Department of Defense and the Department of Energy, to produce groundbreaking advancements in the field of cancer diagnosis using AI. For nearly nine years, BPGbio has collaborated closely with the DoD, leveraging BPGbio's vast biobank of clinically annotated samples and domain-specific AI models, as well as Frontier, the world’s fastest supercomputer through an exclusive partnership with the DoE to discover breakthrough therapeutics and diagnostics. This innovative approach has allowed for the development of cutting-edge diagnostic and screening tests for various cancers, including the development of a prostate cancer screening test that unveiled the groundbreaking biomarker, filamin-A, from years of military samples. The partnership also produced a breast cancer panel targeting ER-positive patients who did not respond to hormone therapy, leading to the discovery of 34 genes that may provide more insight into the cancer's metastatic potential than pathology. The successful outcome of this collaboration has demonstrated the transformative impact of the biology-first AI approach.

4:00 pm

Practical Precision Oncology Decision Support

Ian Maurer, CTO, GenomOncology LLC

Making multi-omic data actionable in a clinical setting requires the integration and processing of a variety of data sources and the availability of a semantically-linked, oncology-focused knowledge graph. This talk provides an overview of practical solutions that address the challenges and complexity involved with interpreting biomarkers, identifying patient cohorts, and finding potential treatment options.

Best of Show Awards Reception in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)4:30 pm

Close of Day5:45 pm

Wednesday, April 17

Registration and Morning Coffee7:30 am

PLENARY KEYNOTE PROGRAM

8:00 am

Organizer's Remarks

Cindy Crowninshield, Executive Event Director, Cambridge Healthtech Institute

8:05 am

Innovative Practices Awards

Joseph Cerro, Independent Consultant

John Conway, Chief Visioneer Officer, 20/15 Visioneers

Chris Dwan, Independent Consultant, Dwan, LLC

Allison Proffitt, Editorial Director, Bio-IT World and Clinical Research News

Since 2003, Bio-IT World has hosted an elite awards program with the goal of highlighting outstanding examples of how technology innovations and strategic initiatives are being applied to advance life sciences research. The 2024 Innovative Practices Awards winners represent excellence in innovation in the areas of informatics, pre-competitive collaboration, clinical and health IT, and genomics. Companies driving the winning entries include AstraZeneca, DNAnexus, Pistoia Alliance, Regeneron, Tempus, and UK Biobank.

8:20 am Plenary Keynote Introduction

Kshitij Kumar, Founder and CEO, Clovertex

8:30 am PLENARY KEYNOTE PRESENTATION:

Lights, Camera, Science: Film and Social Media Influence on Real-World Scientific Progress and Innovation

David Hewlett, Actor/Writer/Director; Creator, The Tech Bandits

Now, more than ever, life sciences are subject to misinterpretation, reduction, and inaccuracies at the hands of social media and Hollywood. And while it might be tempting to ignore the fake science streaming on YouTube and TikTok, there’s a generation of would-be investigators for whom those platforms might be their primary introduction to research and discovery. David Hewlett has had his share of big screen roles representing science—and science fiction—and he believes it’s imperative that the scientific and technology communities take back the narrative, filling gaps between what’s real and what could be real soon! He’s meeting this future generation where they are in schools, on YouTube, and on Twitch, championing real science in all its iterative, messy, exploratory glory, to recruit bright, diverse minds to lead the next generation of real scientists. He’s got our report from the front lines.

Coffee Break in the Exhibit Hall with Poster Viewing (Sponsorship Opportunity Available)9:45 am

Organizer's Remarks10:30 am

INTEGRATING COMPUTATIONAL PLATFORMS, KNOWLEDGE GRAPHS, AND GENERATIVE AI: UNVEILING SCIENCE INITIATIVES IN DRUG DISCOVERY & DEVELOPMENT

Chairperson's Remarks (Sponsorship Opportunity Available)10:35 am

10:40 am CO-PRESENTATION:

Unveiling the Potential of Phytochemicals in Drug Development—Holistic Insights through Digital Twins, in silico Design, and Virtual Trials 

Tania Bhattacharya, Data Science Intern, Centre for Development of Advanced Computing (C-DAC)

Jaspreet Kaur Dhanjal, PhD, Assistant Professor, Department of Computational Biology, Indraprastha Institute of Information Technology, Delhi

Cezary Mazurek, PhD, Director, Poznan Supercomputing and Networking Center, Poland

Koninika Ray, PhD, Director, Biomedical Research and Coordinator, Ayurveda Developmental Therapeutic Program (ADTP), Open Health Systems Laboratory (OHSL)

Amit Saxena, Scientist-E, Centre for Development of Advanced Computing (C-DAC)

Anil Srivastava, President, Open Health Systems Laboratory (OHSL)

Eric Stahlberg, PhD, Director, Cancer Data Science Initiatives, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Rockville, Maryland, USA

Mariano Vazquez, PhD, Co-Founder and CTO, ELEM Biotech, Barcelona, Spain

Open Health Systems Laboratory (OHSL) as part of its Ayurveda Developmental Therapeutics Program (ADTP) has brought together an international team science consortium. The members of the consortium have been working together on developing an in silico workflow for (a) identifying phytochemicals with potential of therapeutic properties, (b) leveraging click chemistry to conjugate with antibodies or other therapeutic candidate molecules to improve efficacy, potency, and reduce side effects; (c) binding to proteins and active site(s) of receptors; (d) computer based drug design to be used for integrative medicine among other therapeutic potential; (e) virtual clinical trials in the initial stages with an eye towards further development in the clinic; (f) using a cohort of digital siblings to propose new candidate molecules for new drugs based on analog development as supported in digital siblings space. 

12:10 pm Cause-and-Effect to Empower Drug Discovery in a Generative AI World

Daniel Jamieson, CEO, Biorelate

By incorporating cause-and-effect data into knowledge graphs, researchers can access unique insights. The emergence of generative AI technologies has revolutionized the way we interact with data and explore its potential applications in drug discovery. Dr Daniel Jamieson will demonstrate the power of advanced cause-and-effect capturing methods, coupled with generative AI (genAI), in facilitating groundbreaking conclusions for drug discovery.

12:40 pm Don’t Make the Patients Wait: Integrating AI and Wet-Lab to Rapidly Deliver Viable Drug Candidates

Emilia Kruzel, PhD, Vice President of Business Development, Business Development, Syntekabio

AI Technologies can supercharge data analysis and facilitate rapid drug discovery, but they still require significant case-by-case tailoring and experimental validation. Dr. Kruzel will present Syntekabio’s disease-agnostic approach to AI-driven drug discovery that yields viable drug candidates. Bringing together biology, AI, and cloud technologies, Syntekabio is working in a factory-like mode, continuously generating novel and viable drug-candidates for a wide range of diseases. The goal: don’t make the patients wait.

Session Break & Transition to Lunch1:10 pm

1:20 pm LUNCHEON PRESENTATION:Propelling Novel Insights across Therapeutic Portfolio from Single-Cell Atlases

Aleksandar Stojmirovic, PhD, Director, Data Science, Johnson & Johnson Innovative Medicine

Sirisha Sunkara, Associate Director, Translational Data Engineering & Solutions, Johnson & Johnson Innovative Medicine

Unlocking the complexities of cellular landscapes through single-cell atlases offers profound insights into tissue and disease dynamics, informing therapeutic strategies. However, integrating diverse datasets poses significant challenges. While metadata-driven approaches streamline integration, distinguishing biological signals from technical artifacts is crucial. Bridging this gap requires a robust ecosystem of portals and visualization tools tailored for multidisciplinary teams. Our integrated solution addresses these hurdles, enhancing pharmaceutical research's translational potential.

Refreshment Break in the Exhibit Hall with Last Chance Poster Viewing (Sponsorship Opportunity Available)1:50 pm

RETHINKING DRUG DEVELOPMENT WITH HUMAN VIRTUAL MODELS

2:30 pm

Chairperson's Remarks

Eric Stahlberg, PhD, Director, Cancer Data Science Initiatives, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Rockville, Maryland, USA

2:35 pm CO-PRESENTATION:

Rethinking Drug Development with Human Virtual Models

Priyanka Banerjee, PhD, Principal Investigator & Scientist, Charite University of Medicine, Berlin, Germany

Eric Stahlberg, PhD, Director, Cancer Data Science Initiatives, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Rockville, Maryland, USA

Mariano Vazquez, PhD, Co-Founder and CTO, ELEM Biotech, Barcelona, Spain

In the dynamic landscape of life sciences and biomedical IT, the paradigm of drug development is undergoing a transformative shift, marked by the integration of advanced technologies such as Human Virtual Models (HVMs). This session, led by experts, delves into the pivotal role of HVMs and their synergy with advanced technologies like artificial intelligence (AI), machine learning (ML), and generative AI. By harnessing these computational approaches, including predictive analytics and high-performance computing, HVMs enable the simulation of intricate biological systems, offering a nuanced understanding of molecular-level drug interactions. This interdisciplinary strategy, embracing AI and HVMs, accelerates preclinical trials, refines target identification, and optimizes lead development, enhancing the overall efficiency and cost-effectiveness of drug development. Through this innovative biomedical IT approach, the life sciences community is poised to realize tangible outcomes in precision medicine and personalized treatments, marking a groundbreaking era of therapeutic breakthroughs.

Close of Conference4:05 pm






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