AI for Oncology, Precision Medicine, and Health

New and Emerging Data Tools That Enable AI

May 17 - 18, 2023 ALL TIMES EDT

The AI for Oncology, Precision Medicine, and Health track will discuss technology tools that enable artificial intelligence for oncology, precision medicine, and health. First, how do you define the complexity of the problem before applying technology tools? What data is available for doing any of this well? What are the technology tools, including emerging “new and exciting” ones, to consider? Speakers will present focused use cases that discuss all of these questions that help leverage information to identify translation efforts from research to clinical.

Monday, May 15

– 6:00 pm Hackathon*8:00 am

*Separate Complimentary Registration Required, see Hackathon page to submit your project OR register to participate

– 5:00 PM Registration Open – Come Early and Avoid the Lines2:00 pm

Tuesday, May 16

Registration Open7:00 am

Recommended Pre-Conference Workshops and Symposia*8:00 am

On Tuesday, May 16, 2023 Cambridge Healthtech Institute is pleased to offer nine pre-conference workshops scheduled across three time slots (8:00-10:00 am, 10:30 am-12:30 pm, and 1:45-3:45 pm) and two Symposia from 8:25 am-3:45 pm. All are designed to be instructional, interactive and provide in-depth information on a specific topic. They allow for one-on-one interaction and provide a great way to explain more technical aspects that would otherwise not be covered during the main conference tracks that take place Wednesday-Thursday.

*Separate registration required. For details, see Workshop agendas, FAIR Data Symposium agenda, and Knowledge Graphs Symposium agenda.

– 3:45 pm Hackathon*8:00 am

*Separate Complimentary Registration Required, see Hackathon page to submit your project OR register to participate

Refreshment Break and Transition to Plenary Keynote3:45 pm

PLENARY KEYNOTE PROGRAM

4:00 pm

Plenary Keynote Organizer's Remarks

Cindy Crowninshield, Executive Event Director, Cambridge Healthtech Institute

4:05 pm

Innovative Practices Awards

Joseph Cerro, Independent Consultant

Chris Dwan, Independent Consultant, Dwan, LLC

Allison Proffitt, Editorial Director, Bio-IT World

The Innovative Practices Awards recognizes and celebrates innovation that advances life sciences research. Bio-IT World is currently accepting entries for the 2023 Innovative Practices Awards, a competition designed to recognize partnerships and projects pushing our industry forward. Winners will be announced in mid-April 2023, recognized during the Tuesday May 16 Plenary Keynote Program, and scheduled to give a 30-minute podium presentation about their project during the conference. The deadline for entry is March 3, 2023. For more details about the Awards and to submit an application, visit the official Bio-IT World Innovative Practices Awards page: https://www.bio-itworld.com/Award/.

4:20 pm Plenary Keynote Introduction

David Gosalvez, PhD, Executive Director, Strategy & Informatics Portfolio, Revvity Signals

4:30 pm PLENARY KEYNOTE PRESENTATION:

The Promise of Data, Analytics, and Technology: Fueling Scientific and Medical Breakthroughs

Anastasia Christianson, PhD, Vice President, Global Head of AI, ML, Analytics, and Data, Pfizer Inc.

Edward Cox, Head & General Manager, Digital Health & Medicines (DHM), Pfizer Inc.

The 21st century has been referred to as the Century of Biology. With 90% of the world’s 97 zettabytes of data generated in the past 2 years and 30% of today’s data being healthcare related, how are we using data technology and advanced analytics (artificial intelligence, machine learning, and deep learning) to advance our understanding of disease and deliver “breakthroughs that change patients' lives?”

Welcome Reception in the Exhibit Hall with Poster Viewing5:45 pm

Close of Day7:00 pm

Wednesday, May 17

Registration and Morning Coffee7:00 am

PLENARY KEYNOTE PROGRAM

8:00 am

Plenary Keynote Organizer's Remarks

Allison Proffitt, Editorial Director, Bio-IT World

8:05 am PLENARY KEYNOTE INTRODUCTION:

Life Science Automation Opportunities – So Many Options, So Little Time

Santanu Sen, Vice President, Healthcare & Life Sciences, Virtusa

The COVID pandemic has demonstrated that therapies and vaccines can be developed in 18 months with a high degree of safety and efficacy. Pioneering work done by companies involved has shed light to archaic processes that have been in existence for decades with little need for change.  In this presentation, we will discuss collaborative efforts, enabling technologies, regulation, and workflow to automate these processes to advance personalized medicine initiatives.

8:15 am PLENARY KEYNOTE PRESENTATION:

Federated Futures: How the Largest Federated Learning Effort in Medicine Will Inform Our Next Steps

Spyridon Bakas, PhD, Assistant Professor, Radiology & Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania

Raymond Y. Huang, MD, PhD, Division Chief, Neuroradiology, Brigham and Women’s Hospital; Associate Professor of Radiology, Harvard Medical School

Jason Martin, Principal Engineer AI Research Science, Security Solutions Lab, Intel Labs

Is a federated learning model sufficient to handle data from 71 institutions and more than 6,000 patients located on six continents? Researchers from Penn Medicine and Intel Labs say yes. An interdisciplinary team created the largest to-date global federated learning effort to develop an accurate and generalizable machine learning model for detecting glioblastoma borders. We will share what we learned about creating and maintaining such a federation, how the software infrastructure evolved over the course of the study, and how this work will empower the future of high-quality, precision clinical care worldwide.

Coffee Break in the Exhibit Hall with Poster Viewing9:30 am

Organizer's Welcome Remarks10:15 am

MULTIMODAL DATA FOR PRECISION DIAGNOSTICS AND RESEARCH

10:20 am

Chairperson's Remarks

Edward Farmer, PhD, Strategic Communications Consultant, Genomics England

10:25 am PANEL DISCUSSION:

Building and Using the World's Largest Multimodal Cancer Research Platform

PANEL MODERATOR:

Edward Farmer, PhD, Strategic Communications Consultant, Genomics England

Over the past twenty years, reference datasets like TCGA have proven invaluable for advancing cancer research. But with WGS entering clinical care, and digital pathology and AI/ML offering new insights into cancer biology, what would a global reference and research platform for the decades ahead need to look like? Genomics England is offering a pathbreaking answer at unprecedented scale. Building a multimodal research platform with linked whole genome sequencing and real-world data cancer resource, it is working with its partners to assemble major new cohorts through enrollment of new patient participants through the UK's Genomic Medicine Service; digitizing hundreds of thousands of pathology and radiology images; providing AI/ML tools for users; and making all of the ~100PB of data queriable in a secure cloud environment. Learn more from the leaders of this effort, digital pathology partner NPIC and cloud partner AWS.

PANELISTS:

Prabhu Arumugam, PhD, Director of Clinical Data and Imaging, Caldicott Guardian, Genomics England

Daljeet Bansal, PhD, Operations Director, National Pathology Imaging Co-operative, Leeds Teaching Hospitals NHS Trust

Ankit Malhotra, PhD, Global Genomics Lead, Worldwide Public Sector, Amazon Web Services

Parker Moss, Chief Commercial & Partnership Officer, Genomics England

11:55 am Modern AI Pathology Platform solutions for Translational Research and Diagnostic Support

Thomas Westerling-Bui, PhD, Chief Commercial Officer, Americas, US Operations, Aiforia, Inc.

Pathology is dependent on precise visual analysis. Automation and precision in these workflows enables significant benefits to pathologists and patients. Join Aiforia to hear how your organization can leverage AI. Showcase includes the rapid adoption of translational AI at Mayo Clinic and QuantCRC, a prognostic AI model of colorectal cancer developed at Mayo Clinic. This presentation will be a valuable opportunity to learn about the latest advancements in AI in pathology.

12:25 pm Real World Data Analysis of Cancer Genomic Features Associated with ctDNA-Positivity in Persistent Disease

Noah Friedman, MS, Senior Bioinformatics Data Scientist, Clinicogenomics Data Insights, Natera

Circulating tumor DNA (ctDNA) has emerged as a quantitative, prognostic and predictive biomarker that enables longitudinal assessment of a patient’s cancer.
In the real-world data setting, ctDNA can serve as an outcome measure to add nuance to our understanding of disease progression and scale biomarker analysis.
We show how analysis of a clinicogenomics database containing whole-exome tumor profiles and ctDNA data elucidates genomic features associated with persistent disease.

 

Session Break and Transition to Luncheon Presentation12:55 pm

Luncheon Presentation (Sponsorship Opportunity Available) or Enjoy Lunch on Your Own1:05 pm

Refreshment Break in the Exhibit Hall with Poster Viewing1:50 pm

APPLYING DATA TO UNDERSTAND DISEASE PATHOLOGY AND APPLICATION IN THERAPEUTIC AREAS

2:35 pm

Chairperson's Remarks

Kamal Rawal, PhD, Professor and Head, Center for Computational Biology and Bioinformatics, Amity University

2:40 pm

Multi-Omic Advanced Analytics and Machine Learning Analysis to Predict ALS Disease Progression

Devanshi Patel, PhD, Manager, Data Science & Analytics, AbbVie, Inc.

Utilizing an integrated multi-omic approach (with genomic, transcriptomic, proteomic, and epigenomic data, as well as clinical and digital health data), we completed analyses for each dataset and used significant results as features in our machine learning (ML) models to predict ALS disease progression. Data is from Answer ALS, the largest public ALS data portal that is partnered with Microsoft, which currently has 1200+ participants (patients/controls) with 2.6 T data points. Learn how integrating these significant multi-omic results forms stronger personalized models to predict disease progression more accurately to better understand disease pathology and can be applied in other therapeutic areas.

3:10 pm

Building Artificial Intelligence-Enabled System for Early Detection of Lung Cancer: Implication in Diagnosis and Therapeutics

Kamal Rawal, PhD, Professor and Head, Center for Computational Biology and Bioinformatics, Amity University

The prognosis of lung carcinoma has changed since the discovery of molecular targets and their specific drugs. Somatic EGFR mutations have been reported in lung carcinoma, and these mutant proteins act as substrates for targeted therapies. However, in a resource-constrained country like India, panel-based next-generation sequencing cannot be made available to the population at large. Additional challenges include adequacy of tissue in case of lung core biopsies, locating suitable tumour tissues as a result of innate intratumoral heterogeneity, the shift in EGFR mutation status after subsequent chemotherapy, and reduced DNA quality indicates the necessity of an AI-based end-to-end pipeline capable of automatically detecting and learning more effective lung nodule features from CT images and predicting the probability of the EGFR-mutant. This will help the oncologists and patients in resource-limited settings to achieve near-optimal care and appropriate therapy.  

3:40 pm

Can Artificial Intelligence and Patient Care Coexist?

Janet Ahn, Director, Compliance Analytics, Otsuka

Artificial intelligence permeates lives, promising to reduce human error while improving speed and accuracy. Specifically, in healthcare where there are vast mountains of data plus advances in computational power, AI is the ideal candidate to support advancements. However, the U.S. FDA which provides guidance to ensure the safety and efficacy of products and services have provided little guidance regarding AI outside of the “ten principles” as part of GMLP. These ten principles while beneficial may be inadequate in providing a robust framework for the development of AI-enabled technology. After attending this presentation, you will walk away with the following: 1) Fundamentals of AI, exploration of AI-enabled technology including clinical decision-making tools, as well as patient care; 2) Exploration of the FDA’s 10 principles of GMLPs; and, 3) Recommendation for a revised framework to support AI development.

4:10 pm Facilitating Access to and Interrogation of Deep Multiomics Oncology RWD Using Amazon Omics and AWS Data Exchange with Caris Life Sciences

Praveen Haridas, Healthcare and Life Sciences Lead - AWS Data Exchange, Amazon Web Services

David Spetzler, PhD, President and Chief Scientific Officer, Caris Life Sciences

Robust multimodal RWD datasets in oncology are frequently difficult to access and are often assembled with incomplete genomic and/or clinical information. This lack of comprehensiveness leads to an inability to reconcile much of tumor biology with the clinical care being applied. A diagnostic provider that paired a holistic approach to patient profiling with an easy-to-use set of tools to link and interrogate the data would be of great value to the research community. Join us to learn how Caris Life Sciences is using Amazon Omics Sequence Stores and Variant Stores to store a comprehensive set of oncology real world data. This deep multiomics data is available for access and interrogation via the AWS Data Exchange. AWS Data Exchange removes the friction of finding, procuring, and using third party clinical data across global sources. 

Best of Show Awards Reception in the Exhibit Hall with Poster Viewing4:40 pm

Close of Day6:00 pm

Thursday, May 18

Registration and Morning Coffee7:30 am

PLENARY KEYNOTE PROGRAM

8:00 am

Plenary Keynote Organizer's Remarks

Cindy Crowninshield, Executive Event Director, Cambridge Healthtech Institute

Plenary Keynote Sponsor Introduction (Opportunity Available)8:05 am

8:15 am PLENARY PANEL DISCUSSION:

Assessing Innovation: How Pharma Makes Tech Investment Decisions

PANEL MODERATOR:

Aaron Mann, CEO, Clinical Research Data Sharing Alliance

This panel session will assemble senior leaders who evaluate new technology adoption. We will hold an interactive discussion to help provide transparency in the evaluation and decision-making process for assessing and investing in new technologies. Themes we will cover include: 1) process for evaluating, piloting, and scaling new technologies and technology approaches; 2) how an organization evaluates an emerging technology vendor landscape; 3) when and how a formal buying process becomes required, and 4) identifying key stakeholders, decision-makers, and gatekeepers. 

PANELISTS:

April Bingham, Executive Director, Global Medical Compliance and Governance Chapter, Roche

Peter Mesenbrink, PhD, Executive Director, Biostatistics, Novartis Pharmaceuticals

Maria Palombini, Global Practice Leader, Healthcare & Life Sciences, IEEE Standards Association

Laszlo Vasko, Senior Director, Clinical Innovation R&D IT, Janssen Pharmaceuticals, Inc.

Coffee Break in the Exhibit Hall with Poster Viewing9:30 am

Organizer's Remarks10:15 am

TOWARDS PRECISION MEDICINE: DATASETS, COMPUTATION, AND DATA INTEGRATION FOR PATIENT SUBSETTING RESEARCH – PART I

10:20 am

Chairperson's Remarks

Benjamin R. Busby, PhD, Director, Solution Science, DNAnexus, Inc.

10:25 am PANEL DISCUSSION:

Towards Precision Medicine: Datasets, Computation, and Data Integration for Patient Subsetting Research – Part I

PANEL MODERATOR:

Benjamin R. Busby, PhD, Director, Solution Science, DNAnexus, Inc.

Accessible data plus reproducible computation is necessary for coherent disease subtyping, paving the way for cohort-specific treatment and prevention, particularly when large, multimodal datasets can be employed for this subtyping. Fortunately, porting end to end workflows to huge datasets that cannot be moved for policy and technical reasons is now a reality while smaller datasets, such as those used for variant annotation, can be moved into these ecosystems. Circa 2023, data and compute alone have not been sufficient for said subtyping; they must be paired with domain expertise in order to yield actionable insights. As such, data visualization is critical for allowing humans to be in the loop, and therefore realize the immense potential of patient specific interventions.

PANELISTS:

Erin Chu, PhD, Life Sciences Lead, Open Data, Amazon Web Services LLC

Evan Floden, PhD, CEO, Seqera Labs SL

Gervaise H. Henry, Senior Solutions Engineer, DNAnexus, Inc.

Emerson Huitt, CEO, Snthesis, Inc.

11:55 am Transforming Medical Image Storage and Model Training in Cloud

Jason Fenwick, Global Business Development, Genomics, NVIDIA

Steve Fu, Principal Solution Architect, Healthcare and Life Sciences, Amazon Web Services (AWS)

Raghav Mani, Director of Healthcare AI Products, NVIDIA

Joseph Peterson, CTO & Co-Founder, SimBioSys

In this panel session discover how imaging firm SimBioSys, with AWS and NVIDIA, enables personalized cancer care through AI and computer simulations. Utilizing MONAI on AWS, this session explores building a platform for identifying ground truth and training AI models using MONAI and Amazon SageMaker, Amazon HealthLake Imaging (HLI), and collaborative learning for training AI models across different institutions without exposing sensitive healthcare data with NVIDIA FLARE.

12:25 pm AI/ML-Based Molecular Imaging Biomarkers to Identify Responders Versus Non-Responders

Rushabh Kamdar, Associate Principal, ZS

Preeti Premraj, MD, Director, Scientific Excellence, ZS

The BioIT audience will gain insights on how to leverage multimodal non-invasive data and AI/ML to generate insights that help in identifying the right patients for the right clinical trials and identify responders versus non-responders. This will ensure the probability of clinical trial success and also enable translational teams to further analyze non-responder data for new target identification and pathway analysis.

Session Break and Transition to Luncheon Presentation12:55 pm

Luncheon Presentation (Sponsorship Opportunity Available) or Enjoy Lunch on Your Own1:05 pm

Refreshment Break in the Exhibit Hall with Poster Viewing1:50 pm

TOWARDS PRECISION MEDICINE: ONCOLOGICAL APPLICATION OF DATA INTEGRATION – PART II

2:35 pm

Chairperson's Remarks

Benjamin R. Busby, PhD, Director, Solution Science, DNAnexus, Inc.

2:40 pm PANEL DISCUSSION:

Towards Precision Medicine: Oncological Application of Data Integration – Part II

PANEL MODERATOR:

Benjamin R. Busby, PhD, Director, Solution Science, DNAnexus, Inc.

The war on cancer is the biomedical endeavor that has most effectively used disease subtyping to combat active cases, improve quality of care and reduce mortality.  As we continue down this path, it is critical to find ways to bring even more data, compute, and domain experts together in this effort, particularly now that machine learning is a widely employed and — used carefully — useful tool for assessing genomic and environmental contributions to disease.  In this session we will hear from experts in all of these areas, and hear about a flexible prototype framework for ongoing subtype assignment and drug recommendation and validation that leverages these resources.  

PANELISTS:

Kelly Bolton, PhD, Assistant Professor, Hematology & Oncology, Washington University

Adam Brown, PhD, Director Product Support, QuartzBio

John Methot, Senior Director, Architecture & Strategy, Dana-Farber Cancer Institute

Close of Conference4:10 pm






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